PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g029850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 718aa    MW: 81757.3 Da    PI: 9.595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g029850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.3e-11309354555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  A e ++sLq
  Csa18g029850.1 309 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLAIAREQLSSLQ 354
                     8889********************97.....8*************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.564304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14306371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-9306358No hitNo description
Gene3DG3DSA:4.10.280.104.6E-13308371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MDAYYNEASQ EPPSSSSSSS SSSSSRCLAR SLLLEYRQSL IPLHNGHVPS MAFMNNLPYV  60
EIRQQEIQRL AYNDAQRLFY QEAKIQTVIF MGCRSGEIEL GMTYDAANMK IEESLREWFP  120
EDFSRNSSPV NSDYLRPPRH PSTSSSSLSP NQVSEYSSLL FPLIPKPSTT TDAVNAPAHP  180
LLAPINMIHQ QQQEPLFRNR EREEEAMTQA ILAVLRGSSS PPSPSSSPLR KGRATAFKRY  240
YCMISGGGRA RPQPSVRKQS MMKRAITFYN RLNIQRRERF VRENATMAAD GSGGSGGGGR  300
SLSTTQLHHM ISERKRREKL NESFQALRSL LPPGTKKDKA SVLAIAREQL SSLQGEISKL  360
LKRNRELEAK LAGEREIGND LQPDERFNVC IRHIPESTSR ERMLDLRVVL REDIIRVDDL  420
MLRLLEFLKQ INNVSLVSIE ARSRARDSSV VLVSLRLKIE KDKASVLAIA REQLSSLQGE  480
ISKLLKRNRE LEAKLAGERE IGNDLQPDER FNVCIRHIPE STSRERMLDL RVVLREDIIR  540
VDDLMLRLLE FLKQINNVSL VSIEARSRAR DSSVVLVSLR LKIEGEWDES AFQEAVRRRN  600
RELEAKLAGE REIGNDLQPD ERFNVCIRHI PESTSRERML DLRVVLREDI IRVDDLMLRL  660
LEFLKQINNV SLVSIEARSR ARDSSVVLVS LRLKIEGEWD ESAFQEAVRR VVADLAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312317ERKRRE
2313318RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483181.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078G7U10.0A0A078G7U1_BRANA; BnaA02g08430D protein
STRINGAT5G56960.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein